Stem-loop chi-mir-449b

Accession

MI0030795

Description

Capra hircus chi-mir-449b precursor miRNA

Literature search

5 open access papers mention chi-mir-449b
(5 sentences)

Sequence

2754 reads, 10.0 reads per million, 30 experiments

ugaccugaaucagguAGGCAGUGUAUUGUUAGCUGGCUGcuuugggucaauucagCAGCCACAACUGCCCUGCCACUUGcuucuggauaaauucuuc
...((.(((.(((((.(((((.(((..(((.(.((((((((............))))))))))))))).)))))))))).))).))...........

Structure

--------uga  u   u     A     U   UU   A C        uuggg 
           cc gaa caggu GGCAG GUA  GUU G UGGCUGcu     u
           || ||| ||||| ||||| |||  ||| | ||||||||      
           gg cuu GUUCA CCGUC CGU  CAA C ACCGACga     c
cuucuuaaaua  u   c     -     C   --   - -        cuuaa 

Annotation confidence Medium

Genome context

chr20: 24946735-24946831 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-449b

Mature chi-miR-449b-5p

• Accession: MIMAT0036232
• Description: Capra hircus chi-miR-449b-5p mature miRNA
• Sequence: 16 - AGGCAGUGUAUUGUUAGCUGGCUG - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-449b-3p

• Accession: MIMAT0036233
• Description: Capra hircus chi-miR-449b-3p mature miRNA
• Sequence: 56 - CAGCCACAACUGCCCUGCCACUUG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40