Stem-loop chi-mir-449c

Accession

MI0030796

Description

Capra hircus chi-mir-449c precursor miRNA

Literature search

3 open access papers mention chi-mir-449c
(13 sentences)

Sequence

4741 reads, 18.0 reads per million, 28 experiments

aagcuugaaugugucagguAGGCAGUGCAUCUCUAGCUGGCUguuaauauuucauuuuaacaguugcuaguugcacuccccgcuguugcauucauaaucuu
.....(((((((..(((...((.((((((...(((((.(((((((((.........)))))))))))))).))))))))...)))..))))))).......

Structure

--aagcu       gu   guA  C      UCU     U         uau 
       ugaaugu  cag   GG AGUGCA   CUAGC GGCUguuaa   u
       |||||||  |||   || ||||||   ||||| |||||||||   u
       acuuacg  guc   cc ucacgu   gaucg uugacaauu   c
uucuaau       uu   gcc  -      --u     -         uua 

Annotation confidence Not enough data

Genome context

chr20: 24945519-24945619 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-449c

Mature chi-miR-449c-5p

• Accession: MIMAT0036234
• Description: Capra hircus chi-miR-449c-5p mature miRNA
• Sequence: 20 - AGGCAGUGCAUCUCUAGCUGGCU - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40