Stem-loop chi-mir-455

Accession

MI0030800

Description

Capra hircus chi-mir-455 precursor miRNA

Literature search

19 open access papers mention chi-mir-455
(59 sentences)

Sequence

43231 reads, 133.0 reads per million, 36 experiments

gcgagugcccgcgcccuucccuggcgugaggGUAUGUGCCUUUGGACUACAUcguggaagccagcaccauGCAGUCCAUGGGCAUAUACACuugccucaaggccuaugucauc
((((((.((((((((.......)))))).))((((((((((.((((((.(((.(((........))).))).)))))).)))))))))))))))).....(((....)))...

Structure

------------------      gcccgcgcccuucccuggcgugagg          U      A   c   gaa 
                  gcgagu                         GUAUGUGCCU UGGACU CAU gug   g
                  ||||||                         |||||||||| |||||| ||| |||    
                  cguuCA                         CAUAUACGGG ACCUGA Gua cac   c
cuacuguauccggaacuc      -------------------------          U      C   c   gac 

Annotation confidence High

Genome context

chr8: 105362304-105362416 [+]

Mature chi-miR-455-5p

• Accession: MIMAT0036241
• Description: Capra hircus chi-miR-455-5p mature miRNA
• Sequence: 32 - GUAUGUGCCUUUGGACUACAU - 52
• Evidence: experimental ; Illumina [1]

Mature chi-miR-455-3p

• Accession: MIMAT0036242
• Description: Capra hircus chi-miR-455-3p mature miRNA
• Sequence: 71 - GCAGUCCAUGGGCAUAUACAC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40