Stem-loop chi-mir-485

Accession

MI0030802

Description

Capra hircus chi-mir-485 precursor miRNA

Literature search

18 open access papers mention chi-mir-485
(93 sentences)

Sequence

4366 reads, 14.0 reads per million, 36 experiments

caaguguccacuuaugguacuugaagAGAGGCUGGCCGUGAUGAAUUCGauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUUuuagugucaaauucugccucggagggcuu
((((((.(((....)))))))))((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))...............((((....))))..

Structure

------caaguguccacuuaugguacuug        CU       -    A    auuc 
                             aagAGAGG  GGCCGUG AUGA UUCG    a
                             ||||||||  ||||||| |||| ||||    u
                             UUCUCUCC  UCGGCAC UACU Gagc    c
uucgggaggcuccgucuuaaacugugauu        UC       A    -    gaaa 

Annotation confidence High

Genome context

chr21: 67131798-67131912 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-485

Mature chi-miR-485-5p

• Accession: MIMAT0036244
• Description: Capra hircus chi-miR-485-5p mature miRNA
• Sequence: 27 - AGAGGCUGGCCGUGAUGAAUUCG - 49
• Evidence: experimental ; Illumina [1]

Mature chi-miR-485-3p

• Accession: MIMAT0036245
• Description: Capra hircus chi-miR-485-3p mature miRNA
• Sequence: 64 - GUCAUACACGGCUCUCCUCUCUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40