Stem-loop chi-mir-490

Accession

MI0030805

Description

Capra hircus chi-mir-490 precursor miRNA

Literature search

9 open access papers mention chi-mir-490
(64 sentences)

Sequence

50621 reads, 144.0 reads per million, 36 experiments

uggagaccuugcugguuuggaaaguucauuguucgacaCCAUGGAUCUCCAGGUGGGUcacguuuagagauacacCAACCUGGAGGACUCCAUGCUGUugagcuguucacaagcagcggacacuucua
.((((...((((((.(((((((........((((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))))..))).))))))))))...))))..

Structure

-u    acc      g    -   aguucauu        C      --         G   cac  uua 
  ggag   uugcug uuug gaa        guucgaca CAUGGA  UCUCCAGGU GGU   gu   g
  ||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   ||    
  cuuc   ggcgac gaac cuu        cgaguUGU GUACCU  GGAGGUCCA Cca   ca   a
au    aca      -    a   ------gu        C      CA         A   ---  uag 

Annotation confidence High

Genome context

chr4: 103284707-103284834 [+]

Mature chi-miR-490-5p

• Accession: MIMAT0058972
• Description: Capra hircus chi-miR-490-5p mature miRNA
• Sequence: 39 - CCAUGGAUCUCCAGGUGGGU - 58
• Evidence: experimental ; Illumina [1]

Mature chi-miR-490-3p

• Accession: MIMAT0036250
• Description: Capra hircus chi-miR-490-3p mature miRNA
• Sequence: 76 - CAACCUGGAGGACUCCAUGCUGU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40