Stem-loop chi-mir-495

Accession

MI0030809

Description

Capra hircus chi-mir-495 precursor miRNA

Literature search

20 open access papers mention chi-mir-495
(28 sentences)

Sequence

7319 reads, 24.0 reads per million, 36 experiments

gcacguccgugcccaucagggcugaccgcugguaccugaaaaGAAGUCGCCCAUGUUCUUUUCGcuugauaugugacgAAACAAACAUGGUGCACUUCUUUuucggugucaaaucucagcg
....(((...((((....)))).)))((((((((((.((((((((((.(((((((((..((((((.........).)))))..))))))).)))))))))))).)))).......))))))

Structure

gcacguccgugcccaucagggcugac      -------    u          C  -       CU     - uug 
                          cgcugg       uacc gaaaaGAAGU GC CCAUGUU  UUUCG c   a
                          ||||||       |||| |||||||||| || |||||||  ||||| |   u
                          gcgacu       gugg uuUUUCUUCA CG GGUACAA  AAAgc g   a
--------------------------      cuaaacu    c          -  U       AC     a ugu 

Annotation confidence High

Genome context

chr21: 67111896-67112016 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from chi-mir-495

Mature chi-miR-495-5p

• Accession: MIMAT0058974
• Description: Capra hircus chi-miR-495-5p mature miRNA
• Sequence: 43 - GAAGUCGCCCAUGUUCUUUUCG - 64
• Evidence: experimental ; Illumina [1]

Mature chi-miR-495-3p

• Accession: MIMAT0036256
• Description: Capra hircus chi-miR-495-3p mature miRNA
• Sequence: 79 - AAACAAACAUGGUGCACUUCUUU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40