Stem-loop chi-mir-496

Accession

MI0030810

Description

Capra hircus chi-mir-496 precursor miRNA

Sequence

gacacgucagaagccagcauccGAGUCGGGUACUCGAAUGGAgguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUccuuucaguacuaaauucuucuuggg
.............((((.....((((..((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))..))))...)))).

Structure

gacacgucagaag    caucc    CG      C   U        u     gu         uua 
             ccag     GAGU  GGUACU GAA GGAgguug ccaug  guguucauu   u
             ||||     ||||  |||||| ||| |||||||| |||||  |||||||||    
             gguu     cuua  ucauga cuu ccUCUAAC GGUAC  UAUGAGUag   u
------------g    --cuu    aa      -   u        C     AU         uau 

Annotation confidence Low

Genome context

chr21: 67138399-67138519 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from chi-mir-496

Mature chi-miR-496-5p

• Accession: MIMAT0036257
• Description: Capra hircus chi-miR-496-5p mature miRNA
• Sequence: 23 - GAGUCGGGUACUCGAAUGGA - 42
• Evidence: experimental ; Illumina [1]

Mature chi-miR-496-3p

• Accession: MIMAT0036258
• Description: Capra hircus chi-miR-496-3p mature miRNA
• Sequence: 75 - UGAGUAUUACAUGGCCAAUCU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40