miRBase entry: chi-mir-500

Stem-loop chi-mir-500

Accession

MI0030813

Description

Capra hircus chi-mir-500 precursor miRNA

Sequence

gcucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcuuucugaaugcaAUGCACCUGGGCAAGGAUUCUgagagagggagc
((((((.(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).))))))

Structure

      c     -U         UAC       AGAg   uuu 
gcuccc cucuc  AAUCCUUGC   CUGGGUG    ugc   c
|||||| |||||  |||||||||   |||||||    |||   u
cgaggg gagag  UUAGGAACG   GGUCCAC    acg   g
      a     UC         ---       -GUA   uaa

Annotation confidence Not enough data

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Genome context

chrX: 82603133-82603216 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-500

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-500-5p

Accession	MIMAT0036263
Description	Capra hircus chi-miR-500-5p mature miRNA
Sequence	13 - UAAUCCUUGCUACCUGGGUGAGA - 35
Evidence	experimental Illumina [1]

Mature chi-miR-500-3p

Accession	MIMAT0036264
Description	Capra hircus chi-miR-500-3p mature miRNA
Sequence	52 - AUGCACCUGGGCAAGGAUUCU - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40