Stem-loop chi-mir-500

Accession

MI0030813

Description

Capra hircus chi-mir-500 precursor miRNA

Sequence

gcucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcuuucugaaugcaAUGCACCUGGGCAAGGAUUCUgagagagggagc
((((((.(((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))).))))))

Structure

      c     -U         UAC       AGAg   uuu 
gcuccc cucuc  AAUCCUUGC   CUGGGUG    ugc   c
|||||| |||||  |||||||||   |||||||    |||   u
cgaggg gagag  UUAGGAACG   GGUCCAC    acg   g
      a     UC         ---       -GUA   uaa 

Annotation confidence Low

Genome context

chrX: 82603133-82603216 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-500

Mature chi-miR-500-5p

• Accession: MIMAT0036263
• Description: Capra hircus chi-miR-500-5p mature miRNA
• Sequence: 13 - UAAUCCUUGCUACCUGGGUGAGA - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-500-3p

• Accession: MIMAT0036264
• Description: Capra hircus chi-miR-500-3p mature miRNA
• Sequence: 52 - AUGCACCUGGGCAAGGAUUCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40