Stem-loop chi-mir-505

Accession

MI0030817

Description

Capra hircus chi-mir-505 precursor miRNA

Literature search

6 open access papers mention chi-mir-505
(50 sentences)

Sequence

6472 reads, 20.0 reads per million, 36 experiments

uaaauugaugcacccaguggGGGAGCCAGGAAGUAUUGAUGUUUcugccaguuuagCGUCAACACUUGCUGGUUUCCUcucuggagcaucacuaaauucguggauuuuca
.....((((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))))))...................

Structure

--------------uaaau      ac    u           G    A        Ucug 
                   ugaugc  ccag ggGGGAGCCAG AAGU UUGAUGUU    c
                   ||||||  |||| ||||||||||| |||| ||||||||    c
                   acuacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
acuuuuaggugcuuaaauc      -a    u           G    C        uuug 

Annotation confidence Medium

Genome context

chrX: 45131067-45131176 [-]

Mature chi-miR-505-5p

• Accession: MIMAT0058976
• Description: Capra hircus chi-miR-505-5p mature miRNA
• Sequence: 21 - GGGAGCCAGGAAGUAUUGAUGUUU - 44
• Evidence: experimental ; Illumina [1]

Mature chi-miR-505-3p

• Accession: MIMAT0036269
• Description: Capra hircus chi-miR-505-3p mature miRNA
• Sequence: 57 - CGUCAACACUUGCUGGUUUCCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40