Stem-loop chi-mir-545

Accession

MI0030822

Description

Capra hircus chi-mir-545 precursor miRNA

Literature search

7 open access papers mention chi-mir-545
(55 sentences)

Sequence

4383 reads, 14.0 reads per million, 36 experiments

cccagccuggcacauucguaggccUCAGUAAAUGUUUAUUGGAUGAauaaaugaauggcucaUCAACAAACAUUUAUUGUGUGccugcaaacgugaucuccacagg
.....((((((((.((.(((((((.((((((((((((....(((((.............)))))...)))))))))))).).)))))).)).))).....).))))

Structure

cccag    - -----   a  c      - U            AUUG     auaaa 
     ccug g     cac uu guaggc c CAGUAAAUGUUU    GAUGA     u
     |||| |     ||| || |||||| | ||||||||||||    |||||     g
     ggac c     gug aa cguccG G GUUAUUUACAAA    CUacu     a
-----    a cucua   c  a      U U            -CAA     cggua 

Annotation confidence High

Genome context

chrX: 72713936-72714041 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-545

Mature chi-miR-545-5p

• Accession: MIMAT0036277
• Description: Capra hircus chi-miR-545-5p mature miRNA
• Sequence: 25 - UCAGUAAAUGUUUAUUGGAUGA - 46
• Evidence: experimental ; Illumina [1]

Mature chi-miR-545-3p

• Accession: MIMAT0036278
• Description: Capra hircus chi-miR-545-3p mature miRNA
• Sequence: 63 - UCAACAAACAUUUAUUGUGUG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40