Stem-loop chi-mir-582

Accession

MI0030823

Description

Capra hircus chi-mir-582 precursor miRNA

Literature search

6 open access papers mention chi-mir-582
(9 sentences)

Sequence

6663 reads, 20.0 reads per million, 36 experiments

caaucuguacucuuuggUUACAGUUGUUCAACCAGUUACUaaucuaacuaauugUAACCAGUUGAACAACUGAACCcaaagggugcaaagugaaaacauuucauug
.....((((((((((((...((((((((((((..(((((..............)))))..))))))))))))...)))))))))))).(((((((...))))))).

Structure

--------------caauc            UUA            CA     Uaaucu 
                   uguacucuuugg   CAGUUGUUCAAC  GUUAC      a
                   ||||||||||||   ||||||||||||  |||||       
                   acgugggaaacC   GUCAACAAGUUG  CAAUg      a
guuacuuuacaaaagugaa            CAA            AC     uuaauc 

Annotation confidence High

Genome context

chr20: 20442285-20442390 [+]

Mature chi-miR-582-5p

• Accession: MIMAT0036279
• Description: Capra hircus chi-miR-582-5p mature miRNA
• Sequence: 18 - UUACAGUUGUUCAACCAGUUACU - 40
• Evidence: experimental ; Illumina [1]

Mature chi-miR-582-3p

• Accession: MIMAT0058978
• Description: Capra hircus chi-miR-582-3p mature miRNA
• Sequence: 55 - UAACCAGUUGAACAACUGAACC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40