Stem-loop chi-mir-628

Accession

MI0030825

Description

Capra hircus chi-mir-628 precursor miRNA

Literature search

2 open access papers mention chi-mir-628
(7 sentences)

Sequence

11718 reads, 35.0 reads per million, 36 experiments

auagcuauugugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaauuaauaaccUUCUAGUAAGAGUGGCAGUCGAagggaagggcucaucugacuucuggaa
........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).))..............

Structure

------auagcuau  u   a      -cAU    A   A             aaaa 
              ug guc cuuccu    GCUG CAU UUUACUAGAGGgu    u
              || ||| ||||||    |||| ||| |||||||||||||     
              ac cgg gaaggg    UGAC GUG GAAUGAUCUUcca    u
aaggucuucagucu  u   -      aAGC    G   A             auaa 

Annotation confidence High

Genome context

chr10: 53682641-53682748 [+]

Mature chi-miR-628-5p

• Accession: MIMAT0036281
• Description: Capra hircus chi-miR-628-5p mature miRNA
• Sequence: 23 - AUGCUGACAUAUUUACUAGAGG - 44
• Evidence: experimental ; Illumina [1]

Mature chi-miR-628-3p

• Accession: MIMAT0058979
• Description: Capra hircus chi-miR-628-3p mature miRNA
• Sequence: 60 - UUCUAGUAAGAGUGGCAGUCGA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40