Stem-loop chi-mir-655

Accession

MI0030826

Description

Capra hircus chi-mir-655 precursor miRNA

Literature search

2 open access papers mention chi-mir-655
(3 sentences)

Sequence

2732 reads, 9.0 reads per million, 36 experiments

uucguuucagaacuguucagggauauuugaggAGAGGUUAUCCGUGUUAUGUUCgcuuggcucaucaugaAUAAUACAUGGUUAACCUCUCUuugaauaucaaacucugccucgagg
((((...((((...(((....(((((((((((((((((((.((((((..((((((..((......))))))))..)))))).))))))))))))))))))).)))))))...)))).

Structure

-    uuu    acu   cagg                   U      UA      cu  gc 
 uucg   caga   guu    gauauuugaggAGAGGUUA CCGUGU  UGUUCg  ug  u
 ||||   ||||   |||    ||||||||||||||||||| ||||||  ||||||  ||   
 gagc   gucu   caa    cuauaaguuUCUCUCCAAU GGUACA  AUAagu  ac  c
g    ucc    ---   ---a                   U      UA      --  ua 

Annotation confidence High

Genome context

chr21: 67125414-67125530 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from chi-mir-655

Mature chi-miR-655-5p

• Accession: MIMAT0058980
• Description: Capra hircus chi-miR-655-5p mature miRNA
• Sequence: 33 - AGAGGUUAUCCGUGUUAUGUUC - 54
• Evidence: experimental ; Illumina [1]

Mature chi-miR-655-3p

• Accession: MIMAT0036282
• Description: Capra hircus chi-miR-655-3p mature miRNA
• Sequence: 71 - AUAAUACAUGGUUAACCUCUCU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40