Stem-loop chi-mir-665

Accession

MI0030829

Description

Capra hircus chi-mir-665 precursor miRNA

Literature search

4 open access papers mention chi-mir-665
(20 sentences)

Sequence

2600 reads, 8.0 reads per million, 36 experiments

ccuggaggagggucuccuugAGGGGUCUUGGCCUCUGCCCAggacucuuucaugACCAGUAGGCCGAGGCCCCUcacaggcggcugcuuacucucc
...(((((((((((.((((((((((((((((((((((..(((((....))).))..))).)))))))))))))))).))).)))).))).))))..

Structure

ccu    -   -    u   -                -   CC  -   c 
   ggag gag gguc ccu ugAGGGGUCUUGGCCU CUG  CA gga u
   |||| ||| |||| ||| |||||||||||||||| |||  || |||  
   ucuc uuc ucgg gga acUCCCCGGAGCCGGA GAC  gu cuu c
-cc    a   g    c   c                U   CA  a   u 

Annotation confidence High

Genome context

chr21: 66954668-66954763 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-665

Mature chi-miR-665-5p

• Accession: MIMAT0058982
• Description: Capra hircus chi-miR-665-5p mature miRNA
• Sequence: 21 - AGGGGUCUUGGCCUCUGCCCA - 41
• Evidence: experimental ; Illumina [1]

Mature chi-miR-665-3p

• Accession: MIMAT0036285
• Description: Capra hircus chi-miR-665-3p mature miRNA
• Sequence: 55 - ACCAGUAGGCCGAGGCCCCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40