Stem-loop chi-mir-7

Accession

MI0030831

Description

Capra hircus chi-mir-7 precursor miRNA

Literature search

82 open access papers mention chi-mir-7
(558 sentences)

Sequence

14644 reads, 44.0 reads per million, 36 experiments

uuauacagagccuguagaaaauguagaagauucaguggauguuggucuaguucugugUGGAAGACUAGUGAUUUUGUUGUUUuuagauaacugaaucgaCAACAAAUCACAGUCUGCCAUAUGGcacaggccaugccucuacaggac
..........((((((((..................((....((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).))))))))..))))))))))..

Structure

uuauacagag        aaauguagaagauucagu  augu      a  u        A     A       U      --     a 
          ccuguaga                  gg    uggucu gu cugugUGG AGACU GUGAUUU GUUGUU  Uuuag u
          ||||||||                  ||    |||||| || |||||||| ||||| ||||||| ||||||  |||||  
          ggacaucu                  cc    accgga ca GGUAUACC UCUGA CACUAAA CAACag  aaguc a
--------ca        ------------------  --gu      -  c        G     -       -      cu     a 

Annotation confidence Medium

Genome context

chr8: 78274063-78274209 [-]

Mature chi-miR-7-5p

• Accession: MIMAT0036288
• Description: Capra hircus chi-miR-7-5p mature miRNA
• Sequence: 58 - UGGAAGACUAGUGAUUUUGUUGUUU - 82
• Evidence: experimental ; Illumina [1]

Mature chi-miR-7-3p

• Accession: MIMAT0036289
• Description: Capra hircus chi-miR-7-3p mature miRNA
• Sequence: 100 - CAACAAAUCACAGUCUGCCAUAUGG - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40