Stem-loop chi-mir-874

Accession

MI0030836

Description

Capra hircus chi-mir-874 precursor miRNA

Literature search

13 open access papers mention chi-mir-874
(120 sentences)

Sequence

33588 reads, 110.0 reads per million, 36 experiments

gcuccuucggaugaauuuuugguguuagcccugCGGCCCCACGCACCAGGGUAAGagagacucgcuucCUGCCCUGGCCCGAGGGACCGACUggcugggccugccuucug
..(((...))).(((.....(((..(((((...(((.(((.((..((((((((.(((........))).))))))))..)).))).)))...))))).)))....)))..

Structure

gcuccuucggau   uuuuu   gu     cug   C   A  CA        A   aga 
            gaa     ggu  uagcc   CGG CCC CG  CCAGGGUA Gag   c
            |||     |||  |||||   ||| ||| ||  |||||||| |||    
            cuu     ccg  gucgg   GCC GGG GC  GGUCCCGU cuu   u
----------gu   -ccgu   -g     UCA   A   A  CC        C   cgc 

Annotation confidence High

Genome context

chr7: 48306811-48306920 [-]

Mature chi-miR-874-5p

• Accession: MIMAT0036296
• Description: Capra hircus chi-miR-874-5p mature miRNA
• Sequence: 34 - CGGCCCCACGCACCAGGGUAAG - 55
• Evidence: experimental ; Illumina [1]

Mature chi-miR-874-3p

• Accession: MIMAT0036297
• Description: Capra hircus chi-miR-874-3p mature miRNA
• Sequence: 69 - CUGCCCUGGCCCGAGGGACCGACU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40