Stem-loop chi-mir-9

Accession

MI0030842

Description

Capra hircus chi-mir-9 precursor miRNA

Literature search

112 open access papers mention chi-mir-9
(902 sentences)

Sequence

30582 reads, 100.0 reads per million, 36 experiments

ucUCUUUGGUUAUCUAGCUGUAUGAgugccacagagccgucaUAAAGCUAGAUAACCGAAAGUagaaaugacucuca
(((((((((((((((((((.(((((..((......))..))))).)))))))))))).)))).)))...........

Structure

-----------   -    -            G     gu  ca 
           ucU CUUU GGUUAUCUAGCU UAUGA  gc  c
           ||| |||| |||||||||||| |||||  ||   
           aga GAAA CCAAUAGAUCGA AUacu  cg  a
acucucaguaa   U    G            A     gc  ag 

Annotation confidence Medium

Genome context

chr21: 20827391-20827467 [+]

Mature chi-miR-9-5p

• Accession: MIMAT0036307
• Description: Capra hircus chi-miR-9-5p mature miRNA
• Sequence: 3 - UCUUUGGUUAUCUAGCUGUAUGA - 25
• Evidence: experimental ; Illumina [1]

Mature chi-miR-9-3p

• Accession: MIMAT0036308
• Description: Capra hircus chi-miR-9-3p mature miRNA
• Sequence: 43 - UAAAGCUAGAUAACCGAAAGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40