Stem-loop chi-mir-99a

Accession

MI0030845

Description

Capra hircus chi-mir-99a precursor miRNA

Literature search

9 open access papers mention chi-mir-99a
(25 sentences)

Sequence

cccauuggcauaAACCCGUAGAUCCGAUCUUGUggugaaguggaccgcaCAAGCUCGCUUCUAUGGGUCUGUgucagugug
..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUg ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugUGU UGGGUAUCU  GCU GAACac gc   g
gu          C         UC   C      -  cag 

Annotation confidence Low

Genome context

chr1: 20810454-20810534 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-99a

Mature chi-miR-99a-5p

• Accession: MIMAT0036312
• Description: Capra hircus chi-miR-99a-5p mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAUCUUGU - 33
• Evidence: experimental ; Illumina [1]

Mature chi-miR-99a-3p

• Accession: MIMAT0036313
• Description: Capra hircus chi-miR-99a-3p mature miRNA
• Sequence: 50 - CAAGCUCGCUUCUAUGGGUCUGU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40