Stem-loop chi-mir-99b

Accession

MI0030846

Description

Capra hircus chi-mir-99b precursor miRNA

Literature search

3 open access papers mention chi-mir-99b
(6 sentences)

Sequence

ggcaccCACCCGUAGAACCGACCUUGCGgggccuucgccgcacaCAAGCUCGUGUCUGUGGGUCcguguc
(((((..(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))..)))))

Structure

     cC         AC   C    --C g   c 
ggcac  ACCCGUAGA  CGA CUUG   G ggc u
|||||  |||||||||  ||| ||||   | |||  
cugug  UGGGUGUCU  GCU GAAC   c ccg u
     cC         GU   C    aca g   c 

Annotation confidence Low

Genome context

chr18: 62075592-62075661 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-99b

Mature chi-miR-99b-5p

• Accession: MIMAT0036314
• Description: Capra hircus chi-miR-99b-5p mature miRNA
• Sequence: 7 - CACCCGUAGAACCGACCUUGCG - 28
• Evidence: experimental ; Illumina [1]

Mature chi-miR-99b-3p

• Accession: MIMAT0036315
• Description: Capra hircus chi-miR-99b-3p mature miRNA
• Sequence: 45 - CAAGCUCGUGUCUGUGGGUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40