Stem-loop ocu-mir-302a

Accession

MI0030989

Description

Oryctolagus cuniculus ocu-mir-302a precursor miRNA

Literature search

15 open access papers mention ocu-mir-302a
(38 sentences)

Sequence

4115 reads, 8.0 reads per million, 26 experiments

ccaccacuUAAACGUGGAUGUACUUGCUUUgaaacuaaaaaagUAAGUGCUUCCAUGUUUUGGUGAugg
(((.((((.(((((((((.(((((((((((.........))))))))))).))))))))).)))).)))

Structure

   c    U         U           gaa 
cca cacu AAACGUGGA GUACUUGCUUU   a
||| |||| ||||||||| |||||||||||   c
ggu GUGG UUUGUACCU CGUGAAUgaaa   u
   A    U         U           aaa 

Annotation confidence Medium

Genome context

CM000804.1: 36769946-36770014 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ocu-mir-302a

Mature ocu-miR-302a-5p

• Accession: MIMAT0036320
• Description: Oryctolagus cuniculus ocu-miR-302a-5p mature miRNA
• Sequence: 9 - UAAACGUGGAUGUACUUGCUUU - 30
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature ocu-miR-302a-3p

• Accession: MIMAT0036321
• Description: Oryctolagus cuniculus ocu-miR-302a-3p mature miRNA
• Sequence: 44 - UAAGUGCUUCCAUGUUUUGGUGA - 66
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23426804
   Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
   "Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
   "Reproduction (2013) 145:421-437


2. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344