Stem-loop ocu-mir-373

Accession

MI0030992

Description

Oryctolagus cuniculus ocu-mir-373 precursor miRNA

Literature search

27 open access papers mention ocu-mir-373
(80 sentences)

Sequence

1677 reads, 289.0 reads per million, 11 experiments

gccccgacgguggccCGCAAAAGGGCAGCACUUCCcuugcucuggacuggAAAGUGCUUCCCUUUUGUGUGUcaccgcccgccg
((...(.(((((((.((((((((((.(((((((.((............)).))))))).)))))))))).))))))).).))..

Structure

--  ccc a       c          C       C  uugcu 
  gc   g cgguggc CGCAAAAGGG AGCACUU Cc     c
  ||   | ||||||| |||||||||| ||||||| ||      
  cg   c gccacUG GUGUUUUCCC UCGUGAA gg     u
gc  --c c       U          U       A  ucagg 

Annotation confidence Medium

Genome context

GL018924.1: 215967-216050 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ocu-mir-373

Mature ocu-miR-373-5p

• Accession: MIMAT0058984
• Description: Oryctolagus cuniculus ocu-miR-373-5p mature miRNA
• Sequence: 16 - CGCAAAAGGGCAGCACUUCC - 35
• Evidence: experimental ; SOLiD [1]

Mature ocu-miR-373-3p

• Accession: MIMAT0036326
• Description: Oryctolagus cuniculus ocu-miR-373-3p mature miRNA
• Sequence: 51 - AAAGUGCUUCCCUUUUGUGUGU - 72
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23426804
   Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
   "Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
   "Reproduction (2013) 145:421-437