Stem-loop ocu-mir-520e

Accession

MI0030994

Description

Oryctolagus cuniculus ocu-mir-520e precursor miRNA

Literature search

2 open access papers mention ocu-mir-520e
(2 sentences)

Sequence

55 reads, 21.0 reads per million, 5 experiments

gcuccagucgccacccucaagagggaagcaacuuccgugcgcucagagggAAAGUGCUUCCUUUUUGAGUGUgucugcgggaga
.((((.((.(.(((.(((((((((((((((..((((.(........).))))..))))))))))))))).))).).)).)))).

Structure

g    a  c c   c               ac    g gcg 
 cucc gu g cac cucaagagggaagca  uucc u   c
 |||| || | ||| |||||||||||||||  |||| |    
 gagg cg c gUG GAGUUUUUCCUUCGU  AAgg a   u
a    g  u u   U               GA    g gac 

Annotation confidence Not enough data

Genome context

GL018924.1: 224104-224187 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ocu-mir-520e

Mature ocu-miR-520e-3p

• Accession: MIMAT0036329
• Description: Oryctolagus cuniculus ocu-miR-520e-3p mature miRNA
• Sequence: 51 - AAAGUGCUUCCUUUUUGAGUGU - 72
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23426804
   Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
   "Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
   "Reproduction (2013) 145:421-437