Stem-loop ocu-mir-191

Accession

MI0030998

Description

Oryctolagus cuniculus ocu-mir-191 precursor miRNA

Literature search

39 open access papers mention ocu-mir-191
(132 sentences)

Sequence

2038316 reads, 13922.0 reads per million, 36 experiments

cggcuggacagcgggCAACGGAAUCCCAAAAGCAGCUGUugucuccagagcauuccagCUGCGCUUGGAUUUCGUUCCCugcuuuccugccu
.(((.(((.((((((.((((((((((.((..(((((((.(((.......)))...)))))))..)))))))))))).)))))).))).))).

Structure

c   u   c      C          C  AA       --U   cu 
 ggc gga agcggg AACGGAAUCC AA  GCAGCUG   ugu  c
 ||| ||| |||||| |||||||||| ||  |||||||   |||  c
 ccg ccu ucguCC UUGCUUUAGG UU  CGUCgac   acg  a
u   u   u      C          -  CG       cuu   ag 

Annotation confidence High

Genome context

CM000798.1: 16649737-16649828 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-191

Mature ocu-miR-191-5p

• Accession: MIMAT0036335
• Description: Oryctolagus cuniculus ocu-miR-191-5p mature miRNA
• Sequence: 16 - CAACGGAAUCCCAAAAGCAGCUGU - 39
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature ocu-miR-191-3p

• Accession: MIMAT0036336
• Description: Oryctolagus cuniculus ocu-miR-191-3p mature miRNA
• Sequence: 59 - CUGCGCUUGGAUUUCGUUCCC - 79
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 23426804
   Discovery of pluripotency-associated microRNAs in rabbit preimplantation embryos and embryonic stem-like cells
   "Maraghechi P, Hiripi L, Toth G, Bontovics B, Bosze Z, Gocza E"
   "Reproduction (2013) 145:421-437


2. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344