Stem-loop gma-MIR398d

Accession

MI0031005

Description

Glycine max gma-MIR398d precursor miRNA

Literature search

15 open access papers mention gma-MIR398d
(66 sentences)

Sequence

95570957 reads, 77787.0 reads per million, 178 experiments

auucuacagggUCGUCCUGAGACCACAUGAAacagauucaaaauacaagcauauuugcuugugaccuuuugugacucaguucaUGUGUUCUCAGGUCGCCCCUGcugaa
.(((..(((((.((.(((((((.((((((((.......(((((((((((((....))))))))...)))))........)))))))).))))))).)).)))))..)))

Structure

a   ua     U  U       C        -acagauu     ---        u 
 uuc  caggg CG CCUGAGA CACAUGAA        caaaa   uacaagca a
 |||  ||||| || ||||||| ||||||||        |||||   ||||||||  
 aag  GUCCC GC GGACUCU GUGUacuu        guuuu   guguucgu u
-   uc     C  U       U        gacucagu     cca        u 

Annotation confidence Medium

Genome context

chr2: 46102354-46102462 [+]

Mature gma-miR398d-5p

• Accession: MIMAT0054414
• Description: Glycine max gma-miR398d-5p mature miRNA
• Sequence: 12 - UCGUCCUGAGACCACAUGAA - 31
• Evidence: experimental ; unknown

Mature gma-miR398d-3p

• Accession: MIMAT0036343
• Description: Glycine max gma-miR398d-3p mature miRNA
• Sequence: 84 - UGUGUUCUCAGGUCGCCCCUG - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153