Stem-loop gma-MIR4348b

Accession

MI0031006

Description

Glycine max gma-MIR4348b precursor miRNA

Literature search

1 open access papers mention gma-MIR4348b
(1 sentences)

Sequence

14814 reads, 67.0 reads per million, 175 experiments

uagaaaguAAUAGUCAAACUCAAAAGAUAuugaaagauuauaugcuagacuuguaggauggugauauuguagugguuauagauauaaaagugacuuucuacauguuuaaagcuauaaccaauguaaaaaguaaccuacauucacaaucaccauaauguguggucauuuuacaaguuugacacauaaucuuuuauuaUCUUUUGAAUUUGACUAUUAGuuucua
((((((.(((((((((((.((((((((((.(((((((((((.((.(((((((((((((((((((...((((((((((((((...((((.(((........))).))))...)))))))))..............))))).))))....((((((...))))))))))))))))))))).)).))))))))))).)))))))))).))))))))))).))))))

Structure

      g           C          u           a  c               -------------------    uau     --------------         aua    a   acu 
uagaaa uAAUAGUCAAA UCAAAAGAUA ugaaagauuau ug uagacuuguaggaug                   guga   uguag              ugguuauag   uaaa gug   u
|||||| ||||||||||| |||||||||| ||||||||||| || |||||||||||||||                   ||||   |||||              |||||||||   |||| |||    
aucuuu AUUAUCAGUUU AGUUUUCUau auuuucuaaua ac guuugaacauuuuac                   cacu   acauc              accaauauc   auuu uac   u
      G           A          u           c  a               ugguguguaauaccacuaa    --u     caaugaaaaaugua         gaa    g   auc 

Annotation confidence Medium

Genome context

chr13: 38820668-38820890 [+]

Mature gma-miR4348b-5p

• Accession: MIMAT0054415
• Description: Glycine max gma-miR4348b-5p mature miRNA
• Sequence: 9 - AAUAGUCAAACUCAAAAGAUA - 29
• Evidence: experimental ; unknown

Mature gma-miR4348b-3p

• Accession: MIMAT0036344
• Description: Glycine max gma-miR4348b-3p mature miRNA
• Sequence: 197 - UCUUUUGAAUUUGACUAUUAG - 217
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153