Stem-loop gma-MIR9728

Accession

MI0031008

Description

Glycine max gma-MIR9728 precursor miRNA

Sequence

1472 reads, 20.0 reads per million, 148 experiments

caaccCGCAGAACUGAAACAAGUUGAgaaaugcucaucucuuuguaguuuuuauggguggucgaagcgaacauagguggagacccaaguucggcuuuuaguugcaaggccauggagaagcucaaaacccucaaacuuugagggcaaaaugggcaaaggauuucUCAACUUGUUUCAGUUUUGCAug
......(((((((((((((((((((((((((((((((...((((.(((((((....((((((...((((....((((.(((.......))).))))....))))..))))))..))))))))))).(((((((...)))))))....))))))).....))))))))))))))))))))))))...

Structure

caaccC                        -----       -------------------cuc    u       augg      gaa    acau    g   ac 
      GCAGAACUGAAACAAGUUGAgaaa     ugcucau                      uuug aguuuuu    gugguc   gcga    aggu gag  c
      ||||||||||||||||||||||||     |||||||                      |||| |||||||    ||||||   ||||    |||| |||  c
      CGUUUUGACUUUGUUCAACUcuuu     acgggua                      aaac ucgaaga    uaccgg   cguu    uucg cuu  a
---guA                        aggaa       aaacgggaguuucaaacuccca    -       --gg      -aa    gauu    g   ga 

Annotation confidence Medium

Genome context

chr14: 7083497-7083682 [+]

Mature gma-miR9728-5p

• Accession: MIMAT0036346
• Description: Glycine max gma-miR9728-5p mature miRNA
• Sequence: 6 - CGCAGAACUGAAACAAGUUGA - 26
• Evidence: experimental ; Illumina [1]

Mature gma-miR9728-3p

• Accession: MIMAT0054417
• Description: Glycine max gma-miR9728-3p mature miRNA
• Sequence: 164 - UCAACUUGUUUCAGUUUUGCA - 184
• Evidence: experimental ; unknown

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153