Stem-loop gma-MIR5780c

Accession

MI0031014

Description

Glycine max gma-MIR5780c precursor miRNA

Sequence

16346 reads, 58.0 reads per million, 178 experiments

uguuguucugagucucuaauauauuaaaaguuuuguuuugggccccuaccgccaaUUAAGUGAUGACAUGACAucauuccaaugacugauauauauuggaagagcuguugagauggugccacaccaucacuaaaugaugacaaggaucccaaacaaaacuUUUAAUAUAUCAGGGACUUGGAacaau
.((((((((((((((((.((((((((((((((((((((.(((..(((.......(((.(((((((...((.(((((((.(((((.((...............)).))))).))))))).))...))))))).))).......)))..))))))))))))))))))))))).))))))))))))))))

Structure

u                a                    u   cc   accgcca   A       ACA  A       c     a  gauaua 
 guuguucugagucucu auauauuaaaaguuuuguuu ggg  ccu       aUU AGUGAUG   UG CAucauu caaug cu      u
 |||||||||||||||| |||||||||||||||||||| |||  |||       ||| |||||||   || ||||||| ||||| ||      a
 uaacaAGGUUCAGGGA UAUAUAAUUUucaaaacaaa ccc  gga       uaa ucacuac   ac gugguag guugu ga      u
-                C                    -   ua   acaguag   a       cac  c       a     c  gaaggu 

Annotation confidence Low

Genome context

chr14: 16753071-16753257 [-]

Mature gma-miR5780c-5p

• Accession: MIMAT0054423
• Description: Glycine max gma-miR5780c-5p mature miRNA
• Sequence: 56 - UUAAGUGAUGACAUGACA - 73
• Evidence: experimental ; unknown

Mature gma-miR5780c-3p

• Accession: MIMAT0036352
• Description: Glycine max gma-miR5780c-3p mature miRNA
• Sequence: 161 - UUUAAUAUAUCAGGGACUUGGA - 182
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153