Stem-loop gma-MIR9743

Accession

MI0031025

Description

Glycine max gma-MIR9743 precursor miRNA

Sequence

2573 reads, 42.0 reads per million, 173 experiments

ggcuugAGAGAGUGCUUUGAAGAAAAUGCCauucucgucucuaaguagagaaugcguaagguuaauaggggugacucgugugcauccuuuucucgcauacuuguccgaaucuaggauauuauaguuagggcucgugaaucagcacaugaggggaugcacgcgagagucacccaucaucaccuugcacauucucuacuugcaaaugagacugaCAUUUUCUUCAAAGCACUCUCccaagc
.(((((.(((((((((((((((((((((.((.((((((...(((((((((((((.(((((((......((((((((((((((((((((.((((.(((((..(((((.......))))).))).)).))))((((((........)))))))))))))))))..)))))))))......))))))).)))))))))))))...)))))).)).))))))))))))))))))))).)))))

Structure

g     A                     C  u      cuc             c       uaauag         --           -------------------u    c  -   cu     ga 
 gcuug GAGAGUGCUUUGAAGAAAAUG Ca ucucgu   uaaguagagaaug guaaggu      gggugacuc  gugugcauccu                    uucu gc aua  ugucc  a
 ||||| ||||||||||||||||||||| || ||||||   ||||||||||||| |||||||      |||||||||  |||||||||||                    |||| || |||  |||||  u
 cgaac CUCUCACGAAACUUCUUUUAC gu agagua   guucaucucuuac cguucca      cccacugag  cgcacguaggg                    ggga ug uau  auagg  c
-     c                     a  c      aac             a       cuacua         ag           gaguacacgacuaagugcuc    u  a   -u     au 

Annotation confidence Medium

Genome context

chr18: 18164989-18165227 [+]

Mature gma-miR9743-5p

• Accession: MIMAT0036363
• Description: Glycine max gma-miR9743-5p mature miRNA
• Sequence: 7 - AGAGAGUGCUUUGAAGAAAAUGCC - 30
• Evidence: experimental ; Illumina [1]

Mature gma-miR9743-3p

• Accession: MIMAT0054432
• Description: Glycine max gma-miR9743-3p mature miRNA
• Sequence: 213 - CAUUUUCUUCAAAGCACUCUC - 233
• Evidence: experimental ; unknown

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153