Stem-loop gma-MIR9746g

Accession

MI0031034

Description

Glycine max gma-MIR9746g precursor miRNA

Sequence

augguuauucaauugagauucaagcacuuuucuauguggcuuuaagguguguuuuauugcaugagcaagauguugaaugcaggggguucauaaaacaaauugucaaacuuuugcauaccuuaagcucucaucugagaaguuauuuuuugacggauuugaaguaacuuaacuaaauauaucaccuuaaaacagagcaguacucaucuauuguuauuacuauugcagugcaacaaauuuaauguuagaagaaugacauuaaacuuguuguguauaguauuugaguacucuucuauuuugaagcaauauaugugguuaaguuguuucaaauccaaccuaaaauaguuuagcuuaagacaugcaauuguuugacaauuuguucuauuaauucauugcauucaacauuuugcuuaagcaauuacauggaacaccuuaaauccaugaagaAAAGUGUUUGAAUCUCAAUUAGAUaauca
.((((((((.(((((((((((((((((((((((.(((((.((((((((((.....(((((.(((((((((((((((((((((.(((((.(((.(((((((((((((((..((((((..(((((((((((....)))((((((((((..(..(((((((((((((((((((((.((((((..(.((((((.((((.((((((((...........((((((.((...(((((((.((((((((((......)))))))))).)))))))))))))))..)))))))).)))).)))))).)..)))))).)))))))))))))))))))))..)..))))))))))))))))))..))))))..))))))))))))))).))).))))).))))))))))))))))))))).)))))........)))))))))).))))).))))))))))))))))))))))).))))))))

Structure

a        c                       a     c          ---guuuu     a                     g     c   a               uu      ac        cucaucugag          uu ac                     a      ca c      c    c        ucuauuguuau      u  agu       a          ga 
 ugguuauu aauugagauucaagcacuuuucu ugugg uuuaaggugu        auugc ugagcaagauguugaaugcag ggguu aua aacaaauugucaaac  uugcau  cuuaagcu          aaguuauuuu  g  ggauuugaaguaacuuaacua auauau  c uuaaaa agag aguacuca           uacuau gc   gcaacaa uuuaauguua  a
 |||||||| ||||||||||||||||||||||| ||||| ||||||||||        ||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||  ||||||  ||||||||          ||||||||||  |  ||||||||||||||||||||| ||||||  | |||||| |||| ||||||||           |||||| ||   ||||||| ||||||||||   
 acuaaUAG UUAACUCUAAGUUUGUGAAAaga guacc aaauuccaca        uaacg auucguuuuacaacuuacguu cuuaa uau uuguuuaacaguuug  aacgua  gaauucga          uuugauaaaa  c  ccuaaacuuuguugaauuggu uauaua  g aguuuu ucuu ucaugagu           augaua ug   uguuguu aaauuacagu  g
-        A                       a     u          agguacau     a                     a     u   c               uu      ca        ----------          uc aa                     g      ac a      a    c        ---------uu      -  ---       c          aa 

Annotation confidence Not enough data

Genome context

chr3: 2905626-2906098 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR9746g

Mature gma-miR9746g

• Accession: MIMAT0036372
• Description: Glycine max gma-miR9746g mature miRNA
• Sequence: 445 - AAAGUGUUUGAAUCUCAAUUAGAU - 468
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153