Stem-loop gma-MIR9754

Accession

MI0031047

Description

Glycine max gma-MIR9754 precursor miRNA

Sequence

2595 reads, 129.0 reads per million, 170 experiments

uuucuAUACUUUCGGUCAAACGUGGUCaaguucccuuuacuuucauauugaugaauuggguccccaaacuuuaaaauacauguggauuuagucuccccgaacucuaaaaauacgaugaauucuuagaaaugagggacuaaaucccauguucuuuaaaguuugagggccaaauucauuguaugaaaguguugggaccuUGACCACAUUAGACUGAAAGUAcagaguc
.((((.(((((((((((.((.(((((((((.((((..(((((((((((.((((((((.(((((.(((((((((((..(((((.((((((((((.((.((...(((((.(((.......))).)))))..)).)))))))))))))))))..))))))))))).))))).)))))))))))))))))))..)))).))))))))).)).))))))))))).))))..

Structure

-u    A           A  C         u    uu           u        g     c           au     u          u  c  aac     a   ac 
  uucu UACUUUCGGUC AA GUGGUCaag uccc  uacuuucauau gaugaauu ggucc caaacuuuaaa  acaug ggauuuaguc cc cg   ucuaa aau  g
  |||| ||||||||||| || ||||||||| ||||  ||||||||||| |||||||| ||||| |||||||||||  ||||| |||||||||| || ||   ||||| |||  a
  gaga AUGAAAGUCAG UU CACCAGUuc aggg  gugaaaguaug uuacuuaa ccggg guuugaaauuu  uguac ccuaaaucag gg gu   agauu uua  u
cu    c           A  A         c    uu           -        a     a           cu     -          -  a  -aa     c   ag 

Annotation confidence Medium

Genome context

chr1: 1375012-1375237 [-]

Mature gma-miR9754-5p

• Accession: MIMAT0054452
• Description: Glycine max gma-miR9754-5p mature miRNA
• Sequence: 6 - AUACUUUCGGUCAAACGUGGUC - 27
• Evidence: experimental ; unknown

Mature gma-miR9754-3p

• Accession: MIMAT0036385
• Description: Glycine max gma-miR9754-3p mature miRNA
• Sequence: 198 - UGACCACAUUAGACUGAAAGUA - 219
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153