Stem-loop gma-MIR5380c

Accession

MI0031053

Description

Glycine max gma-MIR5380c precursor miRNA

Sequence

2151 reads, 48.0 reads per million, 170 experiments

gaguuacuCUUGAUCUUCACUAUUCAUUUuauugaaaucuaaugauuaaucauuauauuucaagaaaAUGAAUGGUGAAGAUGAAGAGuuacu
.(((.((((((.((((((((((((((((((.(((((((.((((((....)))))).))))))).)))))))))))))))))).)))))).)))

Structure

g   u      G                  a       c      u 
 agu acuCUU AUCUUCACUAUUCAUUUu uugaaau uaauga u
 ||| |||||| |||||||||||||||||| ||||||| ||||||  
 uca uGAGAA UAGAAGUGGUAAGUAaaa aacuuua auuacu a
-   u      G                  g       u      a 

Annotation confidence Medium

Genome context

chr2: 45344917-45345009 [-]

Mature gma-miR5380c-5p

• Accession: MIMAT0054458
• Description: Glycine max gma-miR5380c-5p mature miRNA
• Sequence: 9 - CUUGAUCUUCACUAUUCAUUU - 29
• Evidence: experimental ; unknown

Mature gma-miR5380c-3p

• Accession: MIMAT0036391
• Description: Glycine max gma-miR5380c-3p mature miRNA
• Sequence: 68 - AUGAAUGGUGAAGAUGAAGAG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153