Stem-loop gma-MIR5670b

Accession

MI0031055

Description

Glycine max gma-MIR5670b precursor miRNA

Literature search

1 open access papers mention gma-MIR5670b
(3 sentences)

Sequence

129817 reads, 463.0 reads per million, 175 experiments

uucaacgaAGCACAUGUGGUGUGAUGUAAGGgaaauaccaugacugaauuuaguugaacccuauuaacaauauucacugugaugcuugacacuguaguucccguaaggaugucaagcaucacaugaauauuguuagagggguuuaacuaaauucaguucuaguauuucccuCACAUCAUACCAUAUUUGCUUCauuga
.((((.((((((.((((((((((((((.((((((((((...(((((((((((((((((((((.(((((((((((((.((((((((((((((.......(((.....)))))))))))))))))))))))))))))).)))))))))))))))))))))...)))))))))).)))))))))))))).)))))).))))

Structure

u    c      C              A          cau                     a             c              cuguagu   c 
 ucaa gaAGCA AUGUGGUGUGAUGU AGGgaaauac   gacugaauuuaguugaacccu uuaacaauauuca ugugaugcuugaca       ucc g
 |||| |||||| |||||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||| ||||||||||||||       ||| u
 aguu CUUCGU UAUACCAUACUACA ucccuuuaug   uugacuuaaaucaauuugggg gauuguuauaagu acacuacgaacugu       agg a
-    a      U              C          auc                     a             -              -------   a 

Annotation confidence High

Genome context

chr2: 10713946-10714143 [-]

Mature gma-miR5670b-5p

• Accession: MIMAT0054460
• Description: Glycine max gma-miR5670b-5p mature miRNA
• Sequence: 9 - AGCACAUGUGGUGUGAUGUAAGG - 31
• Evidence: experimental ; unknown

Mature gma-miR5670b-3p

• Accession: MIMAT0036393
• Description: Glycine max gma-miR5670b-3p mature miRNA
• Sequence: 172 - CACAUCAUACCAUAUUUGCUUC - 193
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153