Dead hairpin entry

Stem-loop gma-MIR5670b

Accession

MI0031055

Description

Glycine max gma-MIR5670b precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention gma-MIR5670b
(3 sentences)

Sequence

129817 reads, 463.0 reads per million, 175 experiments

uucaacgaAGCACAUGUGGUGUGAUGUAAGGgaaauaccaugacugaauuuaguugaacccuauuaacaauauucacugugaugcuugacacuguaguucccguaaggaugucaagcaucacaugaauauuguuagagggguuuaacuaaauucaguucuaguauuucccuCACAUCAUACCAUAUUUGCUUCauuga
.((((.((((((.((((((((((((((.((((((((((...(((((((((((((((((((((.(((((((((((((.((((((((((((((.......(((.....)))))))))))))))))))))))))))))).)))))))))))))))))))))...)))))))))).)))))))))))))).)))))).))))

Structure

u    c      C              A          cau                     a             c              cuguagu   c 
 ucaa gaAGCA AUGUGGUGUGAUGU AGGgaaauac   gacugaauuuaguugaacccu uuaacaauauuca ugugaugcuugaca       ucc g
 |||| |||||| |||||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||| ||||||||||||||       ||| u
 aguu CUUCGU UAUACCAUACUACA ucccuuuaug   uugacuuaaaucaauuugggg gauuguuauaagu acacuacgaacugu       agg a
-    a      U              C          auc                     a             -              -------   a