Stem-loop gma-MIR5780d

Accession

MI0031058

Description

Glycine max gma-MIR5780d precursor miRNA

Sequence

8189 reads, 44.0 reads per million, 178 experiments

auuuuUGUUUUGAGUUUCUGAUAAAUUuuuccauuauuccgaguuccugauauauuaaaaguuuuguuuugggucucuaucgucaauuaagugaugaugugagcucuuccaacauauaucagucguugagaugguaccacaucAUCACUUAACUGACGACAaagacuuaaaauaaaaauuuuaauauaucaagaauucacaacaacggaaaaauuuaucagaaacucaaaacaaaaauc
((((((((((((((((((((((((((((((((........((((((.(((((((((((((.(((((((((((((((...((((((.(((((((((((((((.(((..((((((...........)))).)).)))..))))))))))))))).))))))...))))))))))))))).))))))))))))).))))))........)))))))))))))))))))))))))))))))).

Structure

-                                auuauucc      c             g               cua      a               -a   cu  -    auau 
 auuuuUGUUUUGAGUUUCUGAUAAAUUuuucc        gaguuc ugauauauuaaaa uuuuguuuugggucu   ucguca uuaagugaugaugug  gcu  uc caac    a
 ||||||||||||||||||||||||||||||||        |||||| ||||||||||||| |||||||||||||||   |||||| |||||||||||||||  |||  || ||||    u
 uaaaaacaaaacucaaagacuauuuaaaaagg        cuuaag acuauauaauuuu aaaauaaaauucaga   AGCAGU AAUUCACUAcuacac  ugg  ag guug    c
c                                caacaaca      a             a               aAC      C               ca   -u  a    cuga 

Annotation confidence Low

Genome context

chr9: 5111839-5112077 [+]

Mature gma-miR5780d-5p

• Accession: MIMAT0036396
• Description: Glycine max gma-miR5780d-5p mature miRNA
• Sequence: 6 - UGUUUUGAGUUUCUGAUAAAUU - 27
• Evidence: experimental ; Illumina [1]

Mature gma-miR5780d-3p

• Accession: MIMAT0054463
• Description: Glycine max gma-miR5780d-3p mature miRNA
• Sequence: 144 - AUCACUUAACUGACGACA - 161
• Evidence: experimental ; unknown

References

1. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153