miRBase entry: ppy-mir-515-3

Stem-loop ppy-mir-515-3

Accession

MI0031101

Description

Pongo pygmaeus ppy-mir-515-3 precursor miRNA

Literature search

1 open access papers mention ppy-mir-515-3
(2 sentences)

Sequence

uuggagugagaagaucucauguagucaUUCUCCAAAAGAAAGCACUUUCUGuugucugaaagcaGAGUGCCUUCUUUUGGAGCGUUacuguuugagaaaaaccacguugaaguug
((((.(((.(....(((((..((((.((.(((((((((((.((((..((((((.......)))))))))).))))))))))).)).))))..)))))....)))).)))).....

Structure

-----    a   a aaga     ug    c  U           A    UU      gu 
     uugg gug g    ucuca  uagu aU CUCCAAAAGAA GCAC  UCUGuu  c
     |||| ||| |    |||||  |||| || ||||||||||| ||||  ||||||  u
     aguu cac c    agagu  guca UG GAGGUUUUCUU CGUG  AGacga  g
guuga    g   - aaaa     uu    U  C           C    --      aa

Annotation confidence Not enough data

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Genome context

chr19: 55453959-55454073 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from ppy-mir-515-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-515-5p

Accession	MIMAT0015943
Description	Pongo pygmaeus ppy-miR-515-5p mature miRNA
Sequence	28 - UUCUCCAAAAGAAAGCACUUUCUG - 51
Evidence	not_experimental

Mature ppy-miR-515-3p

Accession	MIMAT0015944
Description	Pongo pygmaeus ppy-miR-515-3p mature miRNA
Sequence	65 - GAGUGCCUUCUUUUGGAGCGUU - 86
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940