Exploration of miRNA families for hypotheses generation |
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|---|---|
| PubMed ID | 24126940 |
| Authors | "Kamanu TK, Radovanovic A, Archer JA, Bajic VB" |
| Journal | "Sci Rep |
| Volume | 3 |
| Pages | 2940 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| ggo-mir-515-1 | MI0031067 | None | chr19 | 53019793 | 53019907 | + | - |
| ggo-mir-519e | MI0031068 | None | chr19 | 53020783 | 53020902 | + | - |
| ggo-mir-520f | MI0031069 | None | chr19 | 53025391 | 53025489 | + | - |
| ggo-mir-515-2 | MI0031070 | None | chr19 | 53028222 | 53028336 | + | - |
| ggo-mir-519c-1 | MI0031071 | None | chr19 | 53038851 | 53038969 | + | - |
| ggo-mir-525 | MI0031072 | None | chr19 | 53041178 | 53041296 | + | - |
| ggo-mir-523 | MI0031073 | None | chr19 | 53042042 | 53042160 | + | - |
| ggo-mir-518f | MI0031074 | None | chr19 | 53043664 | 53043779 | + | - |
| ggo-mir-519b | MI0031075 | None | chr19 | 53044871 | 53044969 | + | - |
| ggo-mir-518b | MI0031076 | None | chr19 | 53046379 | 53046498 | + | - |
| ggo-mir-520c | MI0031077 | None | chr19 | 53049906 | 53050015 | + | - |
| ggo-mir-518c | MI0031078 | None | chr19 | 53051189 | 53051306 | + | - |
| ggo-mir-524 | MI0031079 | None | chr19 | 53053465 | 53053570 | + | - |
| ggo-mir-519d | MI0031080 | None | chr19 | 53055812 | 53055928 | + | - |
| ggo-mir-526a | MI0031081 | None | chr19 | 53069990 | 53070073 | + | - |
| ggo-mir-518e | MI0031082 | None | chr19 | 53073319 | 53073416 | + | - |
| ggo-mir-518d | MI0031083 | None | chr19 | 53078317 | 53078435 | + | - |
| ggo-mir-1283-1 | MI0031084 | None | chr19 | 53081305 | 53081424 | + | - |
| ggo-mir-517c-2 | MI0031085 | None | chr19 | 53063883 | 53063997 | + | - |
| ggo-mir-520g | MI0031086 | None | chr19 | 53084517 | 53084631 | + | - |
| ggo-mir-519c-2 | MI0031087 | None | chr19 | 53092198 | 53092296 | + | - |
| ggo-mir-521 | MI0031088 | None | chr19 | 53093383 | 53093492 | + | - |
| ggo-mir-522 | MI0031089 | None | chr19 | 53095952 | 53096058 | + | - |
| ggo-mir-519a-1 | MI0031090 | None | chr19 | 53097153 | 53097260 | + | - |
| ggo-mir-1283-2 | MI0031091 | None | chr19 | 53098776 | 53098883 | + | - |
| ggo-mir-516a-1 | MI0031092 | None | chr19 | 53101171 | 53101280 | + | - |
| ggo-mir-1283-3 | MI0031093 | None | chr19 | 53102663 | 53102781 | + | - |
| ggo-mir-516a-2 | MI0031094 | None | chr19 | 53105582 | 53105691 | + | - |
| ggo-mir-516b-2 | MI0031095 | None | chr19 | 53068474 | 53068592 | + | - |
| ggo-mir-519a-2 | MI0031096 | None | chr19 | 53108144 | 53108254 | + | - |
| mml-mir-519a-2 | MI0031097 | 11 | 19 | 53454157 | 53454275 | + | High |
| mml-mir-518a-3 | MI0031098 | 33 | 19 | 53507476 | 53507594 | + | High |
| mml-mir-518a-4 | MI0031099 | 13 | 19 | 53522587 | 53522696 | + | High |
| mml-mir-517b | MI0031100 | 116 | 19 | 53530319 | 53530430 | + | - |
| ppy-mir-515-3 | MI0031101 | None | chr19 | 55453959 | 55454073 | + | - |
| ppy-mir-517c-2 | MI0031102 | None | None | None | - | ||
| ppy-mir-517c-1 | MI0031103 | None | chr19 | 55492961 | 55493052 | + | - |
| ppy-mir-518e | MI0031104 | None | chr19 | 55504419 | 55504527 | + | - |
| ppy-mir-520i | MI0031105 | None | chr19 | 55513927 | 55514025 | + | - |
| ppy-mir-521-3 | MI0031106 | None | chr19 | 55522703 | 55522821 | + | - |
| ppy-mir-516a-2 | MI0031107 | None | chr19 | 55535304 | 55535419 | + | - |
| ppy-mir-518a-2 | MI0031108 | None | chr19 | 55536834 | 55536949 | + | - |
| ptr-mir-518g | MI0031109 | None | chr19 | 56078436 | 56078532 | + | - |
| ptr-mir-519f | MI0031110 | None | chr19 | 56099801 | 56099908 | + | High |
| ptr-mir-1283b | MI0031111 | None | chr19 | 56105638 | 56105756 | + | - |
| ptr-mir-188 | MI0002609 | None | chrX | 49888250 | 49888335 | + | - |
| ptr-mir-154 | MI0002597 | None | chr14 | 86308003 | 86308086 | + | High |
| ptr-mir-379 | MI0008652 | None | chr14 | 86270569 | 86270634 | + | High |
| ptr-mir-134 | MI0008535 | None | chr14 | 86302921 | 86302992 | + | - |
| ptr-mir-485 | MI0008681 | None | chr14 | 86303654 | 86303725 | + | High |
| ptr-mir-654 | MI0008841 | None | chr14 | 86288467 | 86288546 | + | High |
| ptr-mir-412 | MI0008660 | None | chr14 | 86313697 | 86313786 | + | - |
| ptr-mir-889 | MI0008870 | None | chr14 | 86296136 | 86296213 | + | - |
| ptr-mir-668 | MI0008850 | None | chr14 | 86303493 | 86303557 | + | - |
| ptr-mir-376a-2 | MI0008647 | None | chr14 | 86288317 | 86288395 | + | - |
| ptr-mir-376a-1 | MI0008646 | None | chr14 | 86289030 | 86289096 | + | High |
| ptr-mir-376c | MI0008649 | None | chr14 | 86287939 | 86288003 | + | High |
| ptr-mir-376b | MI0008648 | None | chr14 | 86288684 | 86288782 | + | - |
| ptr-mir-145 | MI0002559 | None | chr5 | 149630713 | 149630800 | + | High |
| ptr-mir-25 | MI0003072 | None | chr7 | 103150814 | 103150897 | - | High |
| ptr-mir-17 | MI0002995 | None | chr13 | 77006711 | 77006794 | + | High |
| ptr-mir-1323 | MI0008530 | None | chr19 | 56020103 | 56020174 | + | - |
| ptr-mir-506 | MI0006622 | None | chrX | 146962118 | 146962210 | - | High |
| ptr-mir-498 | MI0008693 | None | chr19 | 56022328 | 56022451 | + | - |
| rno-mir-188 | MI0006134 | 28 | chrX | 16110270 | 16110349 | + | Medium |
| rno-mir-329 | MI0000604 | 103 | chr6 | 133862168 | 133862264 | + | High |
| rno-mir-154 | MI0000923 | 35 | chr6 | 133888586 | 133888669 | + | High |
| rno-mir-368 | MI0006139 | None | None | None | Low | ||
| rno-mir-379 | MI0003541 | 102 | chr6 | 133857700 | 133857784 | + | High |
| rno-mir-134 | MI0000907 | 77 | chr6 | 133884547 | 133884619 | + | High |
| rno-mir-541 | MI0003527 | 3100 | chr6 | 133892655 | 133892744 | + | High |
| rno-mir-485 | MI0003549 | 11404 | chr6 | 133885299 | 133885377 | + | High |
| rno-mir-1193 | MI0015445 | 22 | chr6 | 133864698 | 133864817 | + | High |
| rno-mir-412 | MI0003488 | 26 | chr6 | 133893571 | 133893640 | + | High |
| rno-mir-668 | MI0012601 | 77 | chr6 | 133885141 | 133885208 | + | High |
| rno-mir-376c | MI0003543 | 20 | chr6 | 133872439 | 133872522 | + | High |
| rno-mir-376b | MI0003544 | 74 | chr6 | 133873095 | 133873180 | + | High |
| rno-mir-493 | MI0003540 | 36 | chr6 | 133699509 | 133699592 | + | High |
| rno-mir-145 | MI0000918 | 1125 | chr18 | 56969907 | 56969994 | - | High |
| rno-mir-25 | MI0000856 | 1074 | chr12 | 19307340 | 19307423 | - | High |
| rno-mir-290 | MI0000964 | 2 | chr1 | 64538705 | 64538785 | - | Medium |
| rno-mir-500 | MI0006153 | 24 | chrX | 16121332 | 16121411 | + | High |
| ggo-mir-188 | MI0020825 | None | chrX | 50437431 | 50437541 | + | - |
| ggo-mir-216 | MI0002863 | None | chr2A | 50995605 | 50995714 | + | - |
| ggo-mir-154 | MI0002598 | None | chr14 | 85082799 | 85082882 | + | High |
| ggo-mir-379 | MI0020657 | None | chr14 | 85045381 | 85045489 | + | High |
| ggo-mir-134 | MI0002589 | None | chr14 | 85077719 | 85077791 | + | - |
| ggo-mir-541 | MI0039827 | None | chr14 | 85087564 | 85087628 | + | High |
| ggo-mir-485 | MI0020649 | None | chr14 | 85078439 | 85078547 | + | High |
| ggo-mir-654 | MI0020785 | None | chr14 | 85063234 | 85063342 | + | - |
| ggo-mir-1193 | MI0020804 | None | chr14 | 85053385 | 85053496 | + | - |
| ggo-mir-889 | MI0020662 | None | chr14 | 85070907 | 85071016 | + | - |
| ggo-mir-668 | MI0020800 | None | chr14 | 85078261 | 85078371 | + | - |
| ggo-mir-376c | MI0020684 | None | chr14 | 85062699 | 85062808 | + | - |
| ggo-mir-376b | MI0020740 | None | chr14 | 85063462 | 85063571 | + | - |
| ggo-mir-493 | MI0020797 | None | chr14 | 84887397 | 84887506 | + | - |
| ggo-mir-145 | MI0002560 | None | chr5 | 133117057 | 133117144 | + | High |
| ggo-mir-25 | MI0003061 | None | chr7 | 77984485 | 77984568 | + | High |
| ggo-mir-17 | MI0002965 | None | chr13 | 74168191 | 74168274 | + | High |
| ppy-mir-188 | MI0002610 | None | chrX | 50536260 | 50536345 | + | - |
| ppy-mir-154 | MI0002599 | None | chr14 | 102622472 | 102622555 | + | - |
| ppy-mir-379 | MI0014927 | None | chr14 | 102583478 | 102583544 | + | - |
| ppy-mir-134 | MI0002590 | None | chr14 | 102616871 | 102616943 | + | - |
| ppy-mir-541 | MI0015039 | None | chr14 | 102627217 | 102627300 | + | - |
| ppy-mir-485 | MI0014957 | None | chr14 | 102618120 | 102618192 | + | - |
| ppy-mir-654 | MI0015129 | None | chr14 | 102602352 | 102602432 | + | - |
| ppy-mir-1193 | MI0020917 | None | chr14 | 102591485 | 102591597 | + | - |
| ppy-mir-412 | MI0014936 | None | chr14 | 102628169 | 102628259 | + | - |
| ppy-mir-889 | MI0015159 | None | chr14 | 102610033 | 102610111 | + | - |
| ppy-mir-668 | MI0015136 | None | chr14 | 102617958 | 102618024 | + | - |
| ppy-mir-376a-2 | MI0014922 | None | chr14 | 102602202 | 102602281 | + | - |
| ppy-mir-376a-1 | MI0014921 | None | chr14 | 102602915 | 102602982 | + | - |
| ppy-mir-376c | MI0014924 | None | chr14 | 102601818 | 102601883 | + | - |
| ppy-mir-376b | MI0014923 | None | chr14 | 102602569 | 102602668 | + | - |
| ppy-mir-493 | MI0014966 | None | chr14 | 102415715 | 102415803 | + | - |
| ppy-mir-145 | MI0002561 | None | chr5 | 151352993 | 151353080 | + | - |
| ppy-mir-25 | MI0003069 | None | chr7 | 9078853 | 9078936 | - | - |
| ppy-mir-17 | MI0002989 | None | chr13 | 93460030 | 93460113 | + | - |
| ppy-mir-1323 | MI0015267 | None | chr19 | 55446306 | 55446378 | + | - |
| ppy-mir-506 | MI0014979 | None | chrX | 147115915 | 147116038 | - | - |
| ppy-mir-498 | MI0014971 | None | chr19 | 55448578 | 55448701 | + | - |
| ppy-mir-500 | MI0014973 | None | chrX | 50541281 | 50541364 | + | - |
| mml-mir-188 | MI0002608 | 10 | X | 49792434 | 49792519 | + | High |
| mml-mir-154 | MI0007644 | 8 | 7 | 163279913 | 163279996 | + | High |
| mml-mir-379 | MI0007727 | 1659 | 7 | 163243564 | 163243630 | + | High |
| mml-mir-134 | MI0007623 | 332 | 7 | 163274864 | 163274936 | + | High |
| mml-mir-541 | MI0012541 | 16 | 7 | 163284605 | 163284688 | + | High |
| mml-mir-485 | MI0007758 | 16 | 7 | 163275597 | 163275669 | + | High |
| mml-mir-654 | MI0007898 | 27 | 7 | 163260418 | 163260498 | + | High |
| mml-mir-412 | MI0007736 | 9 | 7 | 163285560 | 163285650 | + | High |
| mml-mir-889 | MI0007923 | 232 | 7 | 163268087 | 163268165 | + | High |
| mml-mir-668 | MI0007906 | 9 | 7 | 163275433 | 163275498 | + | Medium |
| mml-mir-376a-2 | MI0007722 | 11 | 7 | 163260268 | 163260347 | + | High |
| mml-mir-376a-1 | MI0007721 | 128 | 7 | 163260981 | 163261048 | + | High |
| mml-mir-376c | MI0007724 | 15 | 7 | 163259890 | 163259955 | + | High |
| mml-mir-376b | MI0007723 | 8 | 7 | 163260635 | 163260734 | + | High |
| mml-mir-493 | MI0007767 | 19 | 7 | 163089327 | 163089415 | + | High |
| mml-mir-145 | MI0002558 | 335 | 6 | 146942235 | 146942322 | + | High |
| mml-mir-25 | MI0003075 | 429 | 3 | 42275973 | 42276056 | - | High |
| mml-mir-17 | MI0003001 | 339 | 17 | 73152113 | 73152196 | + | High |
| mml-mir-1323 | MI0020894 | 132 | 19 | 53434326 | 53434433 | + | High |
| mml-mir-506 | MI0006610 | 1132 | X | 143275344 | 143275452 | - | High |
| mml-mir-498 | MI0007772 | 5 | 19 | 53436085 | 53436208 | + | High |
| gga-mir-466 | MI0003713 | 1 | chr2 | 21752898 | 21752966 | + | Low |
| gga-mir-145 | MI0029338 | 240 | 13 | 8112195 | 8112279 | - | High |
| gga-mir-17 | MI0001184 | 961 | 1 | 148017067 | 148017151 | - | High |
| mmu-mir-188 | MI0000230 | 106 | X | 7114228 | 7114295 | - | High |
| mmu-mir-329 | MI0000605 | 312 | 12 | 109679915 | 109680011 | + | High |
| mmu-mir-154 | MI0000176 | 542 | 12 | 109704867 | 109704932 | + | High |
| mmu-mir-368 | MI0006129 | None | None | None | Low | ||
| mmu-mir-379 | MI0000796 | 1971 | 12 | 109675494 | 109675559 | + | High |
| mmu-mir-134 | MI0000160 | 594 | 12 | 109700573 | 109700643 | + | High |
| mmu-mir-541 | MI0003521 | 2088 | 12 | 109708843 | 109708932 | + | High |
| mmu-mir-485 | MI0003492 | 534 | 12 | 109701336 | 109701408 | + | High |
| mmu-mir-654 | MI0005520 | 109 | 12 | 109689652 | 109689735 | + | - |
| mmu-mir-1193 | MI0006298 | 104 | 12 | 109682105 | 109682225 | + | High |
| mmu-mir-412 | MI0001164 | 104 | 12 | 109709723 | 109709802 | + | High |
| mmu-mir-668 | MI0004134 | 168 | 12 | 109701166 | 109701231 | + | High |
| mmu-mir-376c | MI0003533 | 361 | 12 | 109689152 | 109689237 | + | High |
| mmu-mir-376b | MI0001162 | 809 | 12 | 109689892 | 109689973 | + | High |
| mmu-mir-493 | MI0005514 | 107 | 12 | 109546667 | 109546749 | + | High |
| mmu-mir-25 | MI0000689 | 8777 | 5 | 138163583 | 138163666 | - | High |
| mmu-mir-17 | MI0000687 | 2249 | 14 | 115281103 | 115281186 | + | High |
| mmu-mir-500 | MI0004702 | 189 | X | 7103922 | 7104013 | - | High |
| cfa-mir-188 | MI0010379 | None | X | 42915886 | 42915971 | + | High |
| cfa-mir-379 | MI0008134 | None | 8 | 69535517 | 69535575 | + | High |
| cfa-mir-134 | MI0010382 | None | 8 | 69565142 | 69565214 | + | High |
| cfa-mir-485 | MI0008146 | None | 8 | 69565885 | 69565943 | + | High |
| cfa-mir-889 | MI0027984 | None | 8 | 69558487 | 69558625 | + | High |
| cfa-mir-376a-2 | MI0008142 | None | 8 | 69552209 | 69552266 | + | High |
| cfa-mir-376a-1 | MI0008143 | None | 8 | 69552969 | 69553026 | + | High |
| cfa-mir-376c | MI0010387 | None | 8 | 69551810 | 69551895 | + | High |
| cfa-mir-376b | MI0010386 | None | 8 | 69552568 | 69552666 | + | High |
| cfa-mir-493 | MI0008130 | None | 8 | 69377761 | 69377821 | + | High |
| cfa-mir-145 | MI0010359 | None | 4 | 60015687 | 60015769 | - | High |
| cfa-mir-25 | MI0008111 | None | 6 | 9435994 | 9436052 | + | High |
| cfa-mir-17 | MI0008050 | None | 22 | 42879262 | 42879320 | + | High |
| cfa-mir-506 | MI0028024 | None | X | 117707053 | 117707187 | - | High |
| cfa-mir-500 | MI0008185 | None | X | 42920716 | 42920774 | + | High |
| hsa-mir-466 | MI0014157 | 26 | chr3 | 31161704 | 31161787 | - | Medium |
| hsa-mir-188 | MI0000484 | 115 | chrX | 50003503 | 50003588 | + | High |
| hsa-mir-154 | MI0000480 | 63 | chr14 | 101059755 | 101059838 | + | High |
| hsa-mir-379 | MI0000787 | 331 | chr14 | 101022066 | 101022132 | + | High |
| hsa-mir-134 | MI0000474 | 491 | chr14 | 101054687 | 101054759 | + | High |
| hsa-mir-541 | MI0005539 | 30 | chr14 | 101064495 | 101064578 | + | High |
| hsa-mir-485 | MI0002469 | 114 | chr14 | 101055419 | 101055491 | + | High |
| hsa-mir-654 | MI0003676 | 83 | chr14 | 101040219 | 101040299 | + | High |
| hsa-mir-1193 | MI0014205 | 4 | chr14 | 101030052 | 101030129 | + | - |
| hsa-mir-412 | MI0002464 | 20 | chr14 | 101065447 | 101065537 | + | High |
| hsa-mir-889 | MI0005540 | 80 | chr14 | 101047901 | 101047979 | + | High |
| hsa-mir-668 | MI0003761 | 12 | chr14 | 101055258 | 101055323 | + | - |
| hsa-mir-376a-2 | MI0003529 | 68 | chr14 | 101040069 | 101040148 | + | High |
| hsa-mir-376a-1 | MI0000784 | 91 | chr14 | 101040782 | 101040849 | + | High |
| hsa-mir-376c | MI0000776 | 330 | chr14 | 101039690 | 101039755 | + | High |
| hsa-mir-376b | MI0002466 | 139 | chr14 | 101040436 | 101040535 | + | High |
| hsa-mir-493 | MI0003132 | 96 | chr14 | 100869060 | 100869148 | + | High |
| hsa-mir-145 | MI0000461 | 20797 | chr5 | 149430646 | 149430733 | + | High |
| hsa-mir-25 | MI0000082 | 3994 | chr7 | 100093560 | 100093643 | - | High |
| hsa-mir-17 | MI0000071 | 12840 | chr13 | 91350605 | 91350688 | + | High |
| hsa-mir-1323 | MI0003786 | 81 | chr19 | 53671968 | 53672040 | + | - |
| hsa-mir-506 | MI0003193 | 403 | chrX | 147230720 | 147230843 | - | High |
| hsa-mir-498 | MI0003142 | 70 | chr19 | 53674197 | 53674320 | + | - |