Stem-loop cfa-mir-379

Accession

MI0008134

Description

Canis lupus familiaris cfa-mir-379 precursor miRNA

Literature search

6 open access papers mention cfa-mir-379
(11 sentences)

Sequence

88441 reads, 104.0 reads per million, 80 experiments

UGGUAGACUAUGGAACGUAGGcuuugugauuuuugaccUAUGUAACAUGGUCCACUAAC
((((.(((((((..((((((((............).)))))))..))))))).))))..

Structure

--    A       GA       - uuugu 
  UGGU GACUAUG  ACGUAGG c     g
  |||| |||||||  ||||||| |      
  AUCA CUGGUAC  UGUAUcc g     a
CA    C       AA       a uuuuu 

Annotation confidence High

Genome context

8: 69535517-69535575 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from cfa-mir-379

Mature cfa-miR-379-5p

• Accession: MIMAT0006715
• Description: Canis lupus familiaris cfa-miR-379-5p mature miRNA
• Sequence: 1 - UGGUAGACUAUGGAACGUAGG - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-379-3p

• Accession: MIMAT0051835
• Description: Canis lupus familiaris cfa-miR-379-3p mature miRNA
• Sequence: 39 - UAUGUAACAUGGUCCACUAAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415