Stem-loop rno-mir-25

Accession

MI0000856

Description

Rattus norvegicus rno-mir-25 precursor miRNA

Literature search

25 open access papers mention rno-mir-25
(184 sentences)

Sequence

1123324 reads, 1074 reads per million, 502 experiments

ggccaguguugagAGGCGGAGACACGGGCAAUUGCuggacgcugcccugggCAUUGCACUUGUCUCGGUCUGAcagugccggcc
((((.((((((..((((.((((((.(((((((..((((........))))..))))).)))))))).))))..)))))).))))

Structure

    a      ag    G      C  -     UG    acg 
ggcc guguug  AGGC GAGACA GG GCAAU  Cugg   c
|||| ||||||  |||| |||||| || |||||  ||||    
ccgg cgugac  UCUG CUCUGU UC CGUUA  gguc   u
    c      AG    G      -  A     Cg    ccg 

Annotation confidence High

Genome context

chr12: 19307340-19307423 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-25

Mature rno-miR-25-5p

• Accession: MIMAT0004713
• Description: Rattus norvegicus rno-miR-25-5p mature miRNA
• Sequence: 14 - AGGCGGAGACACGGGCAAUUGC - 35
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-25-3p

• Accession: MIMAT0000795
• Description: Rattus norvegicus rno-miR-25-3p mature miRNA
• Sequence: 52 - CAUUGCACUUGUCUCGGUCUGA - 73
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249