Stem-loop cfa-mir-25

Accession

MI0008111

Description

Canis lupus familiaris cfa-mir-25 precursor miRNA

Literature search

12 open access papers mention cfa-mir-25
(14 sentences)

Sequence

2958960 reads, 2391.0 reads per million, 82 experiments

AGGCGGAGACUUGGGCAAUUGCUggacgcugcccgcgCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.((((((((.((......)).))).))))).)..))))).))))..

Structure

--    G     UU G     -   U  ac 
  AGGC GAGAC  G GCAAU UGC gg  g
  |||| |||||  | ||||| ||| ||   
  UCUG CUCUG  C CGUUA gcg cc  c
AG    G     UU A     C   c  gu 

Annotation confidence High

Genome context

6: 9435994-9436052 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-25

Mature cfa-miR-25-5p

• Accession: MIMAT0051817
• Description: Canis lupus familiaris cfa-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGACUUGGGCAAUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-25-3p

• Accession: MIMAT0006697
• Description: Canis lupus familiaris cfa-miR-25-3p mature miRNA
• Sequence: 38 - CAUUGCACUUGUCUCGGUCUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415