miRBase entry: cfa-mir-500

Stem-loop cfa-mir-500

Accession

MI0008185

Description

Canis familiaris cfa-mir-500 precursor miRNA

Sequence

aauccuugcuaccugggugagagugcuuucugaaugcaAUGCACCUGGGCAAGGAUUCU
(((((((((...(((((((....(((.........)))...))))))))))))))))..

Structure

--         uac       agag   uuu 
  aauccuugc   cugggug    ugc   c
  |||||||||   |||||||    |||   u
  UUAGGAACG   GGUCCAC    acg   g
UC         ---       -GUA   uaa

Annotation confidence Not enough data

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Genome context

chrX: 42779872-42779930 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-500

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-500

Accession	MIMAT0006759
Description	Canis familiaris cfa-miR-500 mature miRNA
Sequence	39 - AUGCACCUGGGCAAGGAUUCU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415