Stem-loop cfa-mir-500

Accession

MI0008185

Description

Canis lupus familiaris cfa-mir-500 precursor miRNA

Literature search

1 open access papers mention cfa-mir-500
(1 sentences)

Sequence

232633 reads, 542.0 reads per million, 82 experiments

AAUCCUUGCUACCUGGGUGAGAGUgcuuucugaaugcAAUGCACCUGGGCAAGGAUUCU
(((((((((...(((((((....(((.........)))...))))))))))))))))..

Structure

--         UAC       AGAG   uuu 
  AAUCCUUGC   CUGGGUG    Ugc   c
  |||||||||   |||||||    |||   u
  UUAGGAACG   GGUCCAC    Acg   g
UC         ---       -GUA   uaa 

Annotation confidence High

Genome context

X: 42920716-42920774 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-500

Mature cfa-miR-500-5p

• Accession: MIMAT0051879
• Description: Canis lupus familiaris cfa-miR-500-5p mature miRNA
• Sequence: 1 - AAUCCUUGCUACCUGGGUGAGAGU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-500-3p

• Accession: MIMAT0006759
• Description: Canis lupus familiaris cfa-miR-500-3p mature miRNA
• Sequence: 38 - AAUGCACCUGGGCAAGGAUUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415