Stem-loop cfa-mir-889

Accession

MI0027984

Description

Canis lupus familiaris cfa-mir-889 precursor miRNA

Literature search

1 open access papers mention cfa-mir-889
(1 sentences)

Sequence

189515 reads, 1134.0 reads per million, 78 experiments

caagcucuucuggauggugcaguucuuuggugcuuaaagAAUGGUUGUCCGUAGUAUGGUCUcuauauucauggUGAUUAAUAUCGGACAACCAUUGUUuuaguauccaacuuugcuucaaaaguucucccaagcacgc
...(((.....((((..((.(((...((((((((.(((.((((((((((((..((.(((((.((((....)))).)))))))..)))))))))))).))).)))).))))....))).))...)))).....)))....

Structure

-caa   cuucu    -gg  c   -ucu    -    u   g            UA  A     U    a 
    gcu     ggau   ug agu    uugg ugcu aaa AAUGGUUGUCCG  GU UGGUC cuau u
    |||     ||||   || |||    |||| |||| ||| ||||||||||||  || ||||| ||||  
    cga     cuug   ac ucg    aacc auga uUU UUACCAACAGGC  UA AUUAG ggua u
cgca   acccu    aaa  u   uuuc    u    u   G            UA  -     U    c 

Annotation confidence High

Genome context

8: 69558487-69558625 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-889

Mature cfa-miR-889-5p

• Accession: MIMAT0051990
• Description: Canis lupus familiaris cfa-miR-889-5p mature miRNA
• Sequence: 40 - AAUGGUUGUCCGUAGUAUGGUCU - 62
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-889-3p

• Accession: MIMAT0034387
• Description: Canis lupus familiaris cfa-miR-889-3p mature miRNA
• Sequence: 75 - UGAUUAAUAUCGGACAACCAUUGUU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545