miRBase entry: ptr-mir-519f

Stem-loop ptr-mir-519f

Accession

MI0031110

Description

Pan troglodytes ptr-mir-519f precursor miRNA

Sequence

gcaagaagaccucaggcugugacaCUCUAGAGGGAAGCGCUUUCUGuuuucugaaaaagAAAGUGCAUCCUUUUAGAGUGUuacuguuugagaaaagcaacguugaag
..........(((((((.(((((((((((((((((.(((((((((............))))))))).))))))))))))))))).)))))))................

Structure

------gcaagaagac       u                 A         Guuuu 
                cucaggc gugacaCUCUAGAGGGA GCGCUUUCU     c
                ||||||| ||||||||||||||||| |||||||||      
                gaguuug cauUGUGAGAUUUUCCU CGUGAAAga     u
gaaguugcaacgaaaa       u                 A         aaaag

Annotation confidence Not enough data

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Genome context

chr19: 56099801-56099908 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from ptr-mir-519f

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ptr-miR-519f-5p

Accession	MIMAT0036456
Description	Pan troglodytes ptr-miR-519f-5p mature miRNA
Sequence	25 - CUCUAGAGGGAAGCGCUUUCUG - 46
Evidence	not_experimental

Mature ptr-miR-519f-3p

Accession	MIMAT0036457
Description	Pan troglodytes ptr-miR-519f-3p mature miRNA
Sequence	60 - AAAGUGCAUCCUUUUAGAGUGU - 81
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940