Stem-loop cfa-mir-506

Accession

MI0028024

Description

Canis lupus familiaris cfa-mir-506 precursor miRNA

Literature search

3 open access papers mention cfa-mir-506
(3 sentences)

Sequence

7810 reads, 82.0 reads per million, 50 experiments

gccugcugccuucggcuuaucuguguucagugcccUACUCAGGGAGGCGUCAUUCACauaaguugauauaUGAAUGGCACCUUUUUGAGUAGGguaauguacaaugaggacaacauuugugguggcauuggcaau
((((((((((.....(((((.((((..((.(((((((((((((((((.((((((((.(((......))).)))))))).))))))))))))))))).))))))))))).((((...)))))))))))..)))...

Structure

---   --       -------uucgg     c    uu  g                 C        C   ag 
   gcc  ugcugcc            cuuau ugug  ca ugcccUACUCAGGGAGG GUCAUUCA aua  u
   |||  |||||||            ||||| ||||  || ||||||||||||||||| |||||||| |||   
   cgg  acggugg            gagua acau  gu augGGAUGAGUUUUUCC CGGUAAGU uau  u
uaa   uu       uguuuacaacag     -    --  a                 A        a   ag 

Annotation confidence High

Genome context

X: 117707053-117707187 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cfa-mir-506

Mature cfa-miR-506-5p

• Accession: MIMAT0034422
• Description: Canis lupus familiaris cfa-miR-506-5p mature miRNA
• Sequence: 36 - UACUCAGGGAGGCGUCAUUCAC - 57
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-506-3p

• Accession: MIMAT0052009
• Description: Canis lupus familiaris cfa-miR-506-3p mature miRNA
• Sequence: 71 - UGAAUGGCACCUUUUUGAGUAGG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545