Stem-loop gga-mir-145

Accession

MI0029338

Description

Gallus gallus gga-mir-145 precursor miRNA

Literature search

5 open access papers mention gga-mir-145
(26 sentences)

Sequence

13907 reads, 240 reads per million, 5 experiments

cgugcucucaggGUCCAGUUUUCCCAGGAAUCCCUUaggcgcuacguuggggAUUCCUGGAAAUACUGUUCUUggggccacggcu
((((.((((((((..((((.((.((((((((((((..((((...)))))))))))))))).)).)))).)))))))).))))...

Structure

---    c        UC    U  C            Ua    c 
   cgug ucucaggG  CAGU UU CCAGGAAUCCCU  ggcg  
   |||| ||||||||  |||| || ||||||||||||  |||| u
   gcac ggggUUCU  GUCA AA GGUCCUUAgggg  uugc  
ucg    c        -U    U  A            --    a 

Annotation confidence Not enough data

Genome context

chr13: 8492485-8492569 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-145

Mature gga-miR-145-5p

• Accession: MIMAT0037542
• Description: Gallus gallus gga-miR-145-5p mature miRNA
• Sequence: 13 - GUCCAGUUUUCCCAGGAAUCCCUU - 36
• Evidence: experimental ; Illumina [2]

Mature gga-miR-145-3p

• Accession: MIMAT0037543
• Description: Gallus gallus gga-miR-145-3p mature miRNA
• Sequence: 53 - AUUCCUGGAAAUACUGUUCUU - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196


2. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973