miRBase entry: ggo-mir-518c

Stem-loop ggo-mir-518c

Accession

MI0031078

Description

Gorilla gorilla ggo-mir-518c precursor miRNA

Sequence

uggagcgagaagaucucaugcugugacUCUCUGGAGGGAAGCACUUUCUGuugucugaaagaaaaCAAAGCGCUUCUCUUUAGAGUGUuacgguuugagaaaagcaacguugaaguug
.............(((((.((((((((.((((((((((((((.(((..((((.(((...))).))))))).)))))))))))))).)))))))).)))))....((((......))))

Structure

-----uggagcgagaaga     u        U              A   UC    g   g 
                  ucuca gcugugac CUCUGGAGGGAAGC CUU  UGuu ucu  
                  ||||| |||||||| |||||||||||||| |||  |||| ||| a
                  agagu uggcauUG GAGAUUUCUCUUCG GAA  ACaa aga  
guugaaguugcaacgaaa     u        U              C   --    a   a

Annotation confidence Not enough data

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Genome context

chr19: 53051189-53051306 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from ggo-mir-518c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-518c-5p

Accession	MIMAT0036421
Description	Gorilla gorilla ggo-miR-518c-5p mature miRNA
Sequence	28 - UCUCUGGAGGGAAGCACUUUCUG - 50
Evidence	not_experimental

Mature ggo-miR-518c-3p

Accession	MIMAT0036422
Description	Gorilla gorilla ggo-miR-518c-3p mature miRNA
Sequence	66 - CAAAGCGCUUCUCUUUAGAGUGU - 88
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940