miRBase entry: ppy-mir-521-3

Stem-loop ppy-mir-521-3

Accession

MI0031106

Description

Pongo pygmaeus ppy-mir-521-3 precursor miRNA

Sequence

cuggagcaagaagaucuuaugcugugacccuccaaagggaagaacuuucuguugucuaaaagaaaagAACGCACUUCCCUUUAGAGUGUuaccgugugagaaaagcaacguugaaguug
..............((((((((.(((((.(((.(((((((((..(.((((....(((...)))..)))).)..))))))))).))).))))).))))))))....((((......))))

Structure

----cuggagcaagaaga        u     c   c         aa u    guug   a 
                  ucuuaugc gugac cuc aaagggaag  c uucu    ucu  
                  |||||||| ||||| ||| |||||||||  | ||||    ||| a
                  agagugug cauUG GAG UUUCCCUUC  G AAga    aga  
guugaaguugcaacgaaa        c     U   A         AC C    --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55522703-55522821 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-521-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-521

Accession	MIMAT0015977
Description	Pongo pygmaeus ppy-miR-521 mature miRNA
Sequence	68 - AACGCACUUCCCUUUAGAGUGU - 89
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940