Stem-loop cfa-mir-493

Accession

MI0008130

Description

Canis lupus familiaris cfa-mir-493 precursor miRNA

Literature search

1 open access papers mention cfa-mir-493
(1 sentences)

Sequence

9411 reads, 14.0 reads per million, 72 experiments

UGUACAUGGUAGGCUUUCAUUcauucguuugcacauucggUGAAGGUCUACUGUGUGCCAG
.((((((((((((((((((((.................))))))))))))))))))))...

Structure

--U                    cauucgu 
   GUACAUGGUAGGCUUUCAUU       u
   ||||||||||||||||||||       u
   CGUGUGUCAUCUGGAAGUgg       g
GAC                    cuuacac 

Annotation confidence High

Genome context

8: 69377761-69377821 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-493

Mature cfa-miR-493-5p

• Accession: MIMAT0051831
• Description: Canis lupus familiaris cfa-miR-493-5p mature miRNA
• Sequence: 1 - UGUACAUGGUAGGCUUUCAUU - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-493-3p

• Accession: MIMAT0006711
• Description: Canis lupus familiaris cfa-miR-493-3p mature miRNA
• Sequence: 41 - UGAAGGUCUACUGUGUGCCAG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415