miRBase entry: ppy-mir-518a-2

Stem-loop ppy-mir-518a-2

Accession

MI0031108

Description

Pongo pygmaeus ppy-mir-518a-2 precursor miRNA

Sequence

cuggagcaagaagaucucaugcugugacuCUGCAAAGGGAAGCCCUUUCugcugucuaaaagaaaaGAAAGCGCUUCCCUUUGGAGUGuuacgguuugagaaaagcagcguugaag
.....((.......(((((.((((((((.((.(((((((((((.((((((....(((...)))..)))))).))))))))))).)).)))))))).)))))......)).......

Structure

--cugga  aagaaga     u        u  G           C      gcug   a 
       gc       ucuca gcugugac CU CAAAGGGAAGC CUUUCu    ucu  
       ||       ||||| |||||||| || ||||||||||| ||||||    ||| a
       cg       agagu uggcauuG GA GUUUCCCUUCG GAAAGa    aga  
gaaguug  -acgaaa     u        U  G           C      --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55536834-55536949 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppy-mir-518a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-518a-5p

Accession	MIMAT0015951
Description	Pongo pygmaeus ppy-miR-518a-5p mature miRNA
Sequence	30 - CUGCAAAGGGAAGCCCUUUC - 49
Evidence	not_experimental

Mature ppy-miR-518a-3p

Accession	MIMAT0015952
Description	Pongo pygmaeus ppy-miR-518a-3p mature miRNA
Sequence	67 - GAAAGCGCUUCCCUUUGGAGUG - 88
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940