miRBase entry: ppy-mir-518e

Stem-loop ppy-mir-518e

Accession

MI0031104

Description

Pongo pygmaeus ppy-mir-518e precursor miRNA

Sequence

cuggagcaagaagaucucaugaugugacccCUCUAGAGGGAAGCACUUUCUGuuggcuaaaagaaaaagAAAGCGCUUCCCUUCAGAGUGuuacgcuuugagaaaagca
..............(((((...((((((..((((.(((((((((.((((((................)))))).))))))))).)))).))))))...)))))......

Structure

cuggagcaagaaga     uga      cc    A         A      Guuggcu 
              ucuca   ugugac  CUCU GAGGGAAGC CUUUCU       a
              |||||   ||||||  |||| ||||||||| ||||||        
              agagu   gcauuG  GAGA UUCCCUUCG GAAAga       a
--------acgaaa     uuc      -U    C         C      aaaagaa

Annotation confidence Not enough data

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Genome context

chr19: 55504419-55504527 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-518e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-518e-5p

Accession	MIMAT0036450
Description	Pongo pygmaeus ppy-miR-518e-5p mature miRNA
Sequence	31 - CUCUAGAGGGAAGCACUUUCUG - 52
Evidence	not_experimental

Mature ppy-miR-518e-3p

Accession	MIMAT0036451
Description	Pongo pygmaeus ppy-miR-518e-3p mature miRNA
Sequence	70 - AAAGCGCUUCCCUUCAGAGUG - 90
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940