Stem-loop cfa-mir-485

Accession

MI0008146

Description

Canis lupus familiaris cfa-mir-485 precursor miRNA

Literature search

3 open access papers mention cfa-mir-485
(3 sentences)

Sequence

35840 reads, 107.0 reads per million, 72 experiments

AGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCU
(((((..(((((((((((.((((...........)))))))).)))))))..)))))..

Structure

--     CU       -    A    auuc 
  AGAGG  GGCCGUG AUGA UUCg    a
  |||||  ||||||| |||| ||||    u
  UCUCC  UCGGCAC UACU Gagc    c
UC     UC       A    -    gaaa 

Annotation confidence High

Genome context

8: 69565885-69565943 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cfa-mir-485

Mature cfa-miR-485-5p

• Accession: MIMAT0006725
• Description: Canis lupus familiaris cfa-miR-485-5p mature miRNA
• Sequence: 1 - AGAGGCUGGCCGUGAUGAAUUC - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-485-3p

• Accession: MIMAT0051846
• Description: Canis lupus familiaris cfa-miR-485-3p mature miRNA
• Sequence: 38 - GUCAUACACGGCUCUCCUCUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415