miRBase entry: ppy-mir-516a-2

Stem-loop ppy-mir-516a-2

Accession

MI0031107

Description

Pongo pygmaeus ppy-mir-516a-2 precursor miRNA

Sequence

caagaagaucucaggcugugaccUUCUCGAGGAAAGAAGCACUUUCuguugucugaaagaaaagaaagugcuuccuuucaggagaguugacgguuuggagaaaagcaacguugaag
........(((((((((((.(.((.(((..((((.((((((((((((....(((...)))..)))))))))))).))))..))))).).))))))).))))...............

Structure

-------caagaaga    -       g c  U   GA    A            guug   g 
               ucuc aggcugu a cU CUC  GGAA GAAGCACUUUCu    ucu  
               |||| ||||||| | || |||  |||| ||||||||||||    ||| a
               agag uuuggca u ga gag  cuuu cuucgugaaaga    aga  
gaaguugcaacgaaa    g       g u  -   ga    c            --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55535304-55535419 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppy-mir-516a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-516a

Accession	MIMAT0036453
Description	Pongo pygmaeus ppy-miR-516a mature miRNA
Sequence	24 - UUCUCGAGGAAAGAAGCACUUUC - 46
Evidence	not_experimental

References

PubMed ID: 24126940
Exploration of miRNA families for hypotheses generation
"Kamanu TK, Radovanovic A, Archer JA, Bajic VB"
"Sci Rep (2013) 3:2940